Treatment of Ornithine Transcarbamylase Deficiency via CRISPR-associated Base Editors.

Short Summary
Ornithine transcarbamylase deficiency is a monogenetic liver diseases, for which no cure besides whole liver transplantation is available. The goal of this study is to develop a CRISPR/Cas9 base editor approach to treat this disease.
Goals
In the proposed study we aim to improve and assess efficacy and safety of in vivo base editing in the liver. The goal is to collect preclinical data for a trial on base editing therapies in OTCD patients. In work package one, we will develop novel, transient base editor approaches with potentially reduced off-target mutation rates. In work package two, we will study on- and off target editing rates of base editors in the liver of a large animal model (pig).
Significance
For OTCD patients, restoration of approximately 10% of the OTC enzyme activity in the liver would be sufficient to cure the disease. We anticipate to develop a bae editor approach that fulfills this requirement, and test it’s efficacy and safety in pigs.
Background
Ornithine transcarbamylase deficiency (OTCD) is the most common urea cycle disorder (UCD). It is an inborn error of liver metabolism, where a deficiency of the ornithine transcarbamylase enzyme leads to an accumulation of neurotoxic ammonia in the blood. There is no cure besides whole liver transplantation. Gene editing via targeted nucleases, such as CRISPR/Cas9, has been suggested as an approach to treat this disease. The system generates a site-specific DNA double-stranded break (DSB), which enables precise modification of the locus when repaired by homologous recombination (HR) from ectopic template DNA. However, recent attempts to apply this technology to mouse models of recessive liver disorders have failed, as in postmitotic hepatocytes the HR pathway is inactive and gene correction rates are low. Recently, a novel CRISPR tool, so-called base editors, have been established. Base editors enable direct conversion of C∙G to T∙A base pairs and vice versa via base deamination. They are therefore independent of DNA break formation and HR. When applied to mouse models of monogenetic liver diseases, the technology enabled gene correction rates above 50%.
  • In vivo cytidine base editing of hepatocytes without detectable off-target mutations in RNA and DNA. L Villiger*, T Rothgangl*, D Witzigmann, R Oka, P J C Lin, W Qi, S Janjuha, C Berk, F Ringnalda, M B Beattie, M Stoffel, B Thöny, J Hall, H Rehrauer, R van Boxtel, Y K Tam and G Schwank. Nature Biomedical Engineering, 2021
  • In vivo adenine base editing of PCSK9 in mice and macaques reduces LDL-cholesterol levels. Tanja Rothgangl1, Melissa K. Dennis2, Paulo J.C. Lin2, Rurika Oka3, Dominik Witzigmann1, Lukas Villiger1, Weihong Qi4, Martina Hruzova6, Lucas Kissling1, Daniela Lenggenhager5, Costanza Borrelli7, Sabina Egli1, Nina Frey6, Noëlle Bakker1, John A. Walker II8, Anastasia P. Kadina8, Denis V. Victorov8, Martin Pacesa9, Susanne Kreutzer4,10, Zacharias Kontarakis4,10, Andreas Moor7, Martin Jinek9, Drew Weissman11, Markus Stoffel6, Ruben van Boxtel3, Kevin Holden8, Norbert Pardi11, Beat Thöny12,13,14, Johannes Häberle12,13,15, Ying K. Tam2, Sean C. Semple2*, and Gerald Schwank1,6*. Nature Biotechnology, 2021.

Technology Translation

CC058347

Prof. Dr. Gerald Schwank

ETH Zurich
Co-Investigators
  • Johannes Häberle
  • Beat Thöny
  • Markus Stoffel

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